Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 338146

Identification

Species:
Arabidopsis lyrata
Gene model
338146
Description
fgenesh1_pg.C_scaffold_2000245
Family
HB
3D structure (top 5)
1X2N 1DU6 2DMN 1B72 1PUF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G62360.1 Score: 1

Ostreococcus tauri

10780 Score: 1

Arabidopsis lyrata

338146 Score: 1
476175 Score: 1

Populus trichocarpa

233519 Score: 1

Selaginella moellendorffii

415291 Score: 1

Arabidopsis lyrata

338146 Score: 1
489727 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.105
Hordeum vulgare knotted class 1 homeodomain protein (k) mRNA, complete cds /cds=p(96,1190) /gb=AF022390
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.17576
Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds /cds=p(165,1103) /gb=EF128061
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.57551
Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds /cds=p(299,1324) /gb=AB028884
Pba.3282
WS01119.B21_M04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01119_M04 3', mRNA sequence /clone=WS01119_M04 /clone_end=3' /gb=CV247908
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Sbi.13097
Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial cds /cds=p(1,1044) /gb=DQ317417
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 338146
DomainStartEndBit scoreE-value
KNOX16911390.75.3e-24
KNOX2120171108.62.1e-29
ELK21223338.23.4e-08
Homeobox2432940.30.011

Sequences