Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 33881

Identification

Species:
Chlorella sp. NC64A
Gene model
33881
Description
estExt_Genewise1Plus.C_20426
Family
C3H
3D structure (top 5)
1X4G 1WF1 2CPJ 2DIS 1X4F
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470757 Score: 1

Arabidopsis thaliana

AT1G07360.1 Score: 1

Carica papaya

evm.TU.supercontig_112.66 Score: 1

Coccomyxa sp. C-169

29405 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g07350.1 Score: 1
LOC_Os07g18050.1 Score: 0.93

Physcomitrella patens

185655 Score: 1

Populus trichocarpa

203457 Score: 1
557974 Score: 0.929

Sorghum bicolor

5010550 Score: 1
5004618 Score: 0.977

Selaginella moellendorffii

154896 Score: 1

Vitis vinifera

GSVIVP00024168001 Score: 1

Chlamydomonas reinhardtii

417182 Score: 1

Expression data

Expressed Sequence Tags

At.12692
Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds /cds=p(89,1540) /gb=AF428354
At.25418
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT1G07360) mRNA, complete cds /cds=p(71,1516) /gb=NM_100610
At.54760
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G07060) mRNA, complete cds /cds=p(1,1092) /gb=NM_120788
Hv.2670
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf68d17, mRNA sequence /gb=AK250256
Os.17507
Oryza sativa Japonica Group cDNA clone:J013067M02, full insert sequence /cds=p(67,1515) /gb=AK120360
Os.5565
Oryza sativa Japonica Group cDNA clone:J023003O14, full insert sequence /gb=AK111689
Pba.5485
WS02550.C21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_J17 3', mRNA sequence /clone=WS02550_J17 /clone_end=3' /gb=DT492399
Ppa.5833
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_185655) mRNA, complete cds /cds=p(227,1651) /gb=XM_001766453
Sbi.1193
CCC1_74_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_74_H12_A007 5', mRNA sequence /clone=CCC1_74_H12_A007 /clone_end=5' /gb=CD221244 /gi=30964678
Vvi.19286
C1G03878 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G03878, mRNA sequence /clone=C1G03878 /gb=EE062734

Domain Architecture

zf-CCCH PF00642 33881
DomainStartEndBit scoreE-value
zf-CCCH15417923.60.00083
RRM_122629145.81.7e-10

Sequences