Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 343486

Identification

Species:
Arabidopsis lyrata
Gene model
343486
Description
fgenesh1_pg.C_scaffold_3003249
Family
HB
3D structure (top 5)
2DMT 2VI6 1FJL 1UHS 2H1K
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G18550.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g10210.1 Score: 1

Expression data

Expressed Sequence Tags

At.50404
51-L021586-065-006-B12S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 006-B12, mRNA sequence /clone=006-B12 /gb=DR750552
At.52810
40-L021586-065-006-C05S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 006-C05, mRNA sequence /clone=006-C05 /gb=DR750747
Mtr.15817
NF084C10LF1F1082 Developing leaf Medicago truncatula cDNA clone NF084C10LF 5', mRNA sequence /clone=NF084C10LF /clone_end=5' /gb=BG452174
Pba.10478
WS02544.B21_L13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_L13 3', mRNA sequence /clone=WS02544_L13 /clone_end=3' /gb=DT490350
Pth.10478
WS02544.B21_L13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_L13 3', mRNA sequence /clone=WS02544_L13 /clone_end=3' /gb=DT490350
Vvi.23029
WIN1149.C21_O12 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O12 3', mRNA sequence /clone=WIN1149_O12 /clone_end=3' /gb=EC993944

Domain Architecture

Homeobox PF00046 343486
DomainStartEndBit scoreE-value
Homeobox6111566.88.2e-17

Sequences