Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 344061

Identification

Species:
Arabidopsis lyrata
Gene model
344061
Description
fgenesh1_pg.C_scaffold_4000403
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.15818
Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds /cds=p(1,2082) /gb=AF344450
At.66241
Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) (SDG21) mRNA, complete cds /cds=p(1,2268) /gb=NM_128034
Mtr.22322
EST5313951 GESD Medicago truncatula cDNA clone pGESD17G14 5' end, mRNA sequence /clone=pGESD17G14 /clone_end=5' /gb=BI312201
Pba.7630
WS02529.BR_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_C23 5', mRNA sequence /clone=WS02529_C23 /clone_end=5' /gb=DT480533
Pth.7630
WS02529.BR_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_C23 5', mRNA sequence /clone=WS02529_C23 /clone_end=5' /gb=DT480533
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

AT_hook PF02178 344061
DomainStartEndBit scoreE-value
AT_hook314311.60.26
YDG_SRA124230991.6e-26
Pre-SET2593611461.2e-40
SET363516169.97.6e-48

Sequences