Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 345050

Identification

Species:
Arabidopsis lyrata
Gene model
345050
Description
fgenesh1_pg.C_scaffold_4001392
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2D9N 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G32930.1 Score: 1

Expression data

Expressed Sequence Tags

At.11296
Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds /cds=p(1,1362) /gb=AF138744
At.21743
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G04990) mRNA, complete cds /cds=p(336,1550) /gb=NM_100378
Mtr.9480
EST484528 GVN Medicago truncatula cDNA clone pGVN-70P3 5' end, mRNA sequence /clone=pGVN-70P3 /clone_end=5' /gb=BG582782
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 345050
DomainStartEndBit scoreE-value
zf-CCCH457143.11.1e-09
zf-CCCH8911540.56.7e-09
zf-CCCH13416038.52.7e-08
zf-CCCH26429046.31.2e-10
zf-CCCH31033639.71.1e-08

Sequences