Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 346639

Identification

Species:
Arabidopsis lyrata
Gene model
346639
Description
fgenesh1_pg.C_scaffold_5000031
Family
HB
3D structure (top 5)
2HI3 1NK2 2E1O 2CUE 1JGG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_65.138 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g45570.1 Score: 1

Physcomitrella patens

123042 Score: 1
73588 Score: 1
71211 Score: 0.942
119971 Score: 0.928

Populus trichocarpa

566499 Score: 1

Sorghum bicolor

4879370 Score: 1

Selaginella moellendorffii

6792 Score: 1

Vitis vinifera

GSVIVP00030483001 Score: 1

Zea mays

GRMZM2G126239_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19738
Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds /cds=p(148,996) /gb=U09332
At.25127
Arabidopsis thaliana HAT2; transcription factor (HAT2) mRNA, complete cds /cds=p(263,1114) /gb=NM_124108
At.35255
Arabidopsis thaliana homeobox-leucine zipper protein, putative / HD-ZIP transcription factor, putative (AT1G70920) mRNA, complete cds /cds=p(171,791) /gb=NM_105760
At.42490
39-L024618-065-007-D05S-SeLB MPIZ-ADIS-065f Arabidopsis thaliana cDNA clone 007-D05, mRNA sequence /clone=007-D05 /gb=DR751625
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Os.8170
Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds /cds=p(70,759) /gb=AF145727
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Ppa.10747
Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds /cds=p(328,810) /gb=AB028075
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 346639
DomainStartEndBit scoreE-value
Homeobox6511964.63.8e-16
HALZ12016441.24.2e-09

Sequences