Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 348708

Identification

Species:
Arabidopsis lyrata
Gene model
348708
Description
fgenesh1_pg.C_scaffold_5002100
Family
TRAF
3D structure (top 5)
2Z8H 2IHC 1R29 3B84 2PPI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G56230.1 Score: 1

Carica papaya

evm.TU.supercontig_19.99 Score: 1

Coccomyxa sp. C-169

79403 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.969

Physcomitrella patens

118125 Score: 1

Populus trichocarpa

424492 Score: 1

Sorghum bicolor

5005188 Score: 1

Selaginella moellendorffii

92030 Score: 1

Vitis vinifera

GSVIVP00029399001 Score: 1

Zea mays

GRMZM2G048192_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43588
Arabidopsis thaliana speckle-type POZ protein-related (AT3G56230) mRNA, complete cds /cds=p(131,979) /gb=NM_115481
Ptp.5870
G086P93.5pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G086P93 5', mRNA sequence /clone=G086P93 /clone_end=5' /gb=DN493652

Domain Architecture

BTB PF00651 348708
DomainStartEndBit scoreE-value
BTB9620473.57.6e-19

Sequences

protein sequence
transcript sequence