Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 37133

Identification

Species:
Ostreococcus tauri
Gene model
37133
Description
1600010121
Family
C3H
3D structure (top 5)
1JMT 2DIT 2DNY 3CW1 1X5U
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

323163 Score: 1
494737 Score: 1

Arabidopsis thaliana

AT5G42820.1 Score: 1
AT5G42820.2 Score: 1

Carica papaya

evm.TU.supercontig_47.47 Score: 1

Chlamydomonas reinhardtii

142476 Score: 1

Coccomyxa sp. C-169

77639 Score: 1

Micromonas pusilla CCMP1545

36315 Score: 1

Micromonas sp. RCC299

71437 Score: 1

Ostreococcus lucimarinus

13306 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g31482.1 Score: 1
LOC_Os09g31482.3 Score: 1

Physcomitrella patens

194373 Score: 1
25638 Score: 1

Populus trichocarpa

741667 Score: 1

Sorghum bicolor

5000148 Score: 1
5002328 Score: 1

Selaginella moellendorffii

230014 Score: 1

Vitis vinifera

GSVIVP00021681001 Score: 1

Zea mays

GRMZM2G031827_P02 Score: 1.044
GRMZM2G031827_P06 Score: 1.044
GRMZM2G031827_P05 Score: 1.044
GRMZM2G031827_P04 Score: 1.044
GRMZM2G031827_P01 Score: 1.044
GRMZM2G091273_P04 Score: 1.035
GRMZM2G091273_P03 Score: 1.035
GRMZM2G091273_P02 Score: 1.035
GRMZM2G091273_P01 Score: 1.035
GRMZM2G091273_P05 Score: 1.035
GRMZM2G025014_P04 Score: 1.035
GRMZM2G025014_P03 Score: 1.035
GRMZM2G025014_P02 Score: 1.035
GRMZM2G025014_P01 Score: 1.035
GRMZM2G025014_P05 Score: 1
GRMZM2G020928_P03 Score: 1
GRMZM2G020928_P02 Score: 1
GRMZM2G020928_P01 Score: 1

Expression data

Expressed Sequence Tags

At.25814
Arabidopsis thaliana ATU2AF35B; RNA binding (ATU2AF35B) mRNA, complete cds /cds=p(132,983) /gb=NM_203141
At.63995
Arabidopsis thaliana ATU2AF35A; RNA binding (ATU2AF35A) mRNA, complete cds /cds=p(200,1090) /gb=NM_102530
Cre.14704
1031060C11.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence /gb=BI722157
Cre.2959
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(146,967) /gb=XM_001696367
Hv.17740
EBem06_SQ003_F03_R embryo, 21 DPA, no treatment, cv Optic, EBem06 Hordeum vulgare subsp. vulgare cDNA clone EBem06_SQ003_F03 5', mRNA sequence /clone=EBem06_SQ003_F03 /clone_end=5' /gb=BM375428
Hv.2252
HVSMEa0017I14f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0017I14f, mRNA sequence /clone=HVSMEa0017I14f /gb=BF624711
Mtr.12672
EST1225259 MTY Medicago truncatula cDNA clone MTYAF50, mRNA sequence /clone=MTYAF50 /gb=DW016298
Mtr.13807
EST1224886 MTY Medicago truncatula cDNA clone MTYAB27, mRNA sequence /clone=MTYAB27 /gb=DW015925
Os.48195
Oryza sativa Japonica Group cDNA, clone: J065168K03, full insert sequence /gb=AK241513
Os.76846
Oryza sativa Japonica Group cDNA clone:J023041B11, full insert sequence /cds=p(143,1057) /gb=AK070198
Os.87690
Oryza sativa Japonica Group cDNA clone:J013025G09, full insert sequence /cds=p(433,1305) /gb=AK099481
Pba.4130
WS01212.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01212_H24 3', mRNA sequence /clone=WS01212_H24 /clone_end=3' /gb=CV233814
Pba.8652
WS01227.BR.1_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_A19 5', mRNA sequence /clone=WS01227_A19 /clone_end=5' /gb=DT472653
Ppa.5704
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_194373) mRNA, complete cds /cds=p(265,1179) /gb=XM_001777064
Pth.4130
WS01212.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01212_H24 3', mRNA sequence /clone=WS01212_H24 /clone_end=3' /gb=CV233814
Pth.8652
WS01227.BR.1_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_A19 5', mRNA sequence /clone=WS01227_A19 /clone_end=5' /gb=DT472653
Ptp.7176
R053H03.5pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R053H03 5', mRNA sequence /clone=R053H03 /clone_end=5' /gb=DN498047
Sbi.14767
WOUND1_17_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_17_F06_A002 5', mRNA sequence /clone=WOUND1_17_F06_A002 /clone_end=5' /gb=CN143684 /gi=45981705

Domain Architecture

zf-CCCH PF00642 37133
DomainStartEndBit scoreE-value
zf-CCCH133935.42e-07
RRM_18314428.91.8e-05
zf-CCCH15217722.50.0015

Sequences