Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 398723

Identification

Species:
Chlamydomonas reinhardtii
Gene model
398723
Description
pasa_Sanger_mRNA35580
Family
TRAF
3D structure (top 5)
2JDQ 1Y2A 1JDH 1WA5 2Z6G
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488817 Score: 1

Arabidopsis thaliana

AT5G19330.1 Score: 1

Chlorella sp. NC64A

134999 Score: 1

Carica papaya

evm.TU.supercontig_370.10 Score: 1

Coccomyxa sp. C-169

81096 Score: 1

Micromonas pusilla CCMP1545

29724 Score: 1

Micromonas sp. RCC299

66240 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g33050.1 Score: 1

Physcomitrella patens

106616 Score: 1

Populus trichocarpa

419382 Score: 1

Sorghum bicolor

5060460 Score: 1

Selaginella moellendorffii

164824 Score: 1

Vitis vinifera

GSVIVP00023713001 Score: 1

Zea mays

GRMZM2G100946_P01 Score: 1
GRMZM2G178375_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20128
Arabidopsis thaliana armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein (AT5G19330) mRNA, complete cds /cds=p(58,2190) /gb=NM_180521
Cre.19064
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_140706) mRNA, partial cds /cds=p(1,1923) /gb=XM_001703649
Mtr.12877
AC0646 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615563
Mtr.13209
AC0629 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615546
Os.7606
Oryza sativa (japonica cultivar-group) Os05g0398100 (Os05g0398100) mRNA, complete cds /cds=p(1,2259) /gb=NM_001062007
Ppa.18257
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106616) mRNA, complete cds /cds=p(1,2088) /gb=XM_001766720
Ppa.25996
CAYY30172.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY30172 5', mRNA sequence /clone=CAYY30172 /clone_end=5' /gb=FC356489
Ppa.6194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106476) mRNA, complete cds /cds=p(1,2097) /gb=XM_001765868
Vvi.24033
WIN052.C21_F19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_F19 3', mRNA sequence /clone=WIN052_F19 /clone_end=3' /gb=EC934792

Domain Architecture

Arm PF00514 398723
DomainStartEndBit scoreE-value
Arm16220242.91.3e-09
Arm20424448.82.1e-11
Arm24628622.80.0014
Arm28832829.41.4e-05
HEAT29433020.20.0086
Arm32936929.41.5e-05
BTB53163391.62.7e-24

Sequences