Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 40355

Identification

Species:
Coccomyxa sp. C-169
Gene model
40355
Description
estExt_Genewise1Plus.C_10396
Family
GNAT
3D structure (top 5)
1OLT 3CIW 2QGQ 1R30
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495092 Score: 1

Arabidopsis thaliana

AT5G50320.1 Score: 1

Cyanidioschyzon merolae

CMM094C Score: 1

Chlorella sp. NC64A

31217 Score: 1

Micromonas pusilla CCMP1545

45784 Score: 1

Micromonas sp. RCC299

64699 Score: 1

Ostreococcus lucimarinus

27329 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g40840.1 Score: 1

Ostreococcus tauri

29517 Score: 1

Populus trichocarpa

570202 Score: 1
776218 Score: 0.935

Sorghum bicolor

5057401 Score: 1

Selaginella moellendorffii

96899 Score: 1
443492 Score: 0.997

Vitis vinifera

GSVIVP00010464001 Score: 1

Zea mays

GRMZM2G100872_P01 Score: 1
GRMZM2G058575_P02 Score: 0.901
GRMZM2G172119_P02 Score: 0.901

Expression data

Expressed Sequence Tags

At.20657
Arabidopsis thaliana ELO3/HAC8/HAG3 (ELONGATA 3); N-acetyltransferase/ catalytic/ iron-sulfur cluster binding (ELO3/HAC8/HAG3) mRNA, complete cds /cds=p(40,1737) /gb=NM_124412
Hv.20736
HVSMEg0006K04f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0006K04f, mRNA sequence /clone=HVSMEg0006K04f /gb=BG343744
Mtr.9659
EST1226521 MTY Medicago truncatula cDNA clone MTYAV16, mRNA sequence /clone=MTYAV16 /gb=DW017560
Os.17516
Oryza sativa Japonica Group cDNA clone:J033149C03, full insert sequence /cds=p(50,1771) /gb=AK122179
Ppa.13093
Physcomitrella patens subsp. patens RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase (HAG1502) mRNA, complete cds /cds=p(1,1701) /gb=XM_001775002
Ppa.775
Physcomitrella patens subsp. patens RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase (HAG1503) mRNA, complete cds /cds=p(1,1722) /gb=XM_001773747
Sbi.7389
DSBF1_15_E11.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_15_E11_A010 3', mRNA sequence /clone=DSBF1_15_E11_A010 /clone_end=3' /gb=CF771205 /gi=37756353
Vvi.11825
VV_PEa16b03.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV229354

Domain Architecture

Radical_SAM PF04055 40355
DomainStartEndBit scoreE-value
Radical_SAM9030254.63.8e-13
Acetyltransf_143852520.30.0078

Sequences