Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 40531

Identification

Species:
Coccomyxa sp. C-169
Gene model
40531
Description
estExt_Genewise1Plus.C_10704
Family
PHD
3D structure (top 5)
1WEP 2RI7 1WEU 1WE9 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487363 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Carica papaya

evm.TU.supercontig_19.165 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g36730.1 Score: 1

Physcomitrella patens

83812 Score: 1

Populus trichocarpa

830643 Score: 1
827481 Score: 0.956

Sorghum bicolor

4798603 Score: 1

Selaginella moellendorffii

99900 Score: 1

Vitis vinifera

GSVIVP00035366001 Score: 1

Zea mays

GRMZM2G073647_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
Cre.3261
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(98,793) /gb=XM_001690305
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.69757
Oryza sativa Japonica Group cDNA clone:J033046L10, full insert sequence /cds=p(85,888) /gb=AK073526
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 40531
DomainStartEndBit scoreE-value
PHD18723731.43.6e-06

Sequences