Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 413266

Identification

Species:
Selaginella moellendorffii
Gene model
413266
Description
fgenesh2_pg.C_scaffold_20000127
Family
MYB-related
3D structure (top 5)
1HST 1UHM 1USS 1UST 1GHC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474123 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Carica papaya

evm.TU.supercontig_25.83 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 1

Populus trichocarpa

175541 Score: 1

Sorghum bicolor

4752357 Score: 1

Vitis vinifera

GSVIVP00001485001 Score: 1

Zea mays

GRMZM2G019921_P01 Score: 1
GRMZM2G136887_P01 Score: 1
GRMZM2G087817_P02 Score: 0.935

Expression data

Expressed Sequence Tags

Ppa.22986
CAYY6088.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY6088 5', mRNA sequence /clone=CAYY6088 /clone_end=5' /gb=FC368834
Ppa.25862
CAYY11722.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY11722 5', mRNA sequence /clone=CAYY11722 /clone_end=5' /gb=FC328231
Ppa.9324
Physcomitrella patens subsp. patens single myb histone protein (SMH1501) mRNA, complete cds /cds=p(271,1308) /gb=XM_001774353

Domain Architecture

Myb_DNA-binding PF00249 413266
DomainStartEndBit scoreE-value
Myb_DNA-binding55733.58.6e-07
Linker_histone11718626.22.1e-06

Sequences