Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 41331

Identification

Species:
Ostreococcus lucimarinus
Gene model
41331
Description
e_gwEuk.6.682.1
Family
Sigma70-like
3D structure (top 5)
1L0O 2A6H 1L9Z 1RP3 1SIG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Cyanidioschyzon merolae

CMR165C Score: 1

Chlorella sp. NC64A

35462 Score: 1

Carica papaya

evm.TU.supercontig_56.12 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

780378 Score: 1

Sorghum bicolor

4779347 Score: 1

Selaginella moellendorffii

117159 Score: 1

Vitis vinifera

GSVIVP00022983001 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G143392_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

Ppa.1
Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872
Ppa.18172
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_160930) mRNA, complete cds /cds=p(243,2018) /gb=XM_001757423
Ppa.24245
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_178031) mRNA, complete cds /cds=p(1,1752) /gb=XM_001757532

Domain Architecture

Sigma70_r1_2 PF00140 41331
DomainStartEndBit scoreE-value
Sigma70_r1_21450608.1e-15
Sigma70_r29516598.32.3e-26
Sigma70_r316925150.17.9e-12
Sigma70_r4264317983e-26

Sequences