Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 414287

Identification

Species:
Populus trichocarpa
Gene model
414287
Description
gw1.III.1390.1
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

916732 Score: 1

Arabidopsis thaliana

AT5G46910.1 Score: 1

Ostreococcus lucimarinus

5502 Score: 1

Selaginella moellendorffii

81310 Score: 1

Zea mays

GRMZM2G060919_P02 Score: 1
GRMZM2G117538_P02 Score: 1

Expression data

Expressed Sequence Tags

At.10092
Arabidopsis thaliana ELF6 (EARLY FLOWERING 6); transcription factor (ELF6) mRNA, complete cds /cds=p(1,4023) /gb=NM_120506
At.55411
Arabidopsis thaliana transcription factor jumonji (jmj) family protein (AT5G46910) mRNA, complete cds /cds=p(1,2124) /gb=NM_124062
Os.7130
Oryza sativa Japonica Group cDNA clone:J033044E04, full insert sequence /cds=p(259,2835) /gb=AK073475
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491

Domain Architecture

JmjN PF02375 414287
DomainStartEndBit scoreE-value
JmjN226637.84e-08
JmjC1983211891.2e-53
zf-C5HC241847133.29.5e-07

Sequences