Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 419958

Identification

Species:
Populus trichocarpa
Gene model
419958
Description
gw1.VIII.1386.1
Family
C3H
3D structure (top 5)
3D9H 1YCS 2FO1 2BKG 1BD8
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21697
Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds /cds=p(170,1912) /gb=AY056282
At.27663
Arabidopsis thaliana CZF1/ZFAR1; transcription factor (CZF1/ZFAR1) mRNA, complete cds /cds=p(190,1983) /gb=NM_129572
At.49189
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G58620) mRNA, complete cds /cds=p(236,2059) /gb=NM_125249
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Mtr.2595
EST646395 HOGA Medicago truncatula cDNA clone HOGA-28M22, mRNA sequence /clone=HOGA-28M22 /gb=CB893603
Pba.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Pba.9720
WS02522.B21_G05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_G05 3', mRNA sequence /clone=WS02522_G05 /clone_end=3' /gb=DT483363
Pth.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Ptp.6284
N036H06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815078
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5592
VV_PEd0013h04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240679

Domain Architecture

Ank PF00023 419958
DomainStartEndBit scoreE-value
Ank76109190.018
Ank11114626.68.9e-05
zf-CCCH26228727.26.2e-05
zf-CCCH2973190.41.2

Sequences