Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 420725

Identification

Species:
Selaginella moellendorffii
Gene model
420725
Description
fgenesh2_pg.C_scaffold_47000199
Family
PHD
3D structure (top 5)
1W4S 1M4Z 1WEP 2RI7 1WEU
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlamydomonas reinhardtii

193681 Score: 1

Coccomyxa sp. C-169

80168 Score: 1

Selaginella moellendorffii

412601 Score: 1
420725 Score: 1

Micromonas sp. RCC299

77910 Score: 1

Ostreococcus lucimarinus

34069 Score: 1

Physcomitrella patens

149469 Score: 1

Selaginella moellendorffii

412601 Score: 1
420725 Score: 1

Selaginella moellendorffii

412601 Score: 1
420725 Score: 1

Populus trichocarpa

573000 Score: 1
727486 Score: 1
828520 Score: 0.901

Sorghum bicolor

149331 Score: 1

Selaginella moellendorffii

412601 Score: 1
420725 Score: 1

Zea mays

GRMZM2G108288_P02 Score: 1
GRMZM2G119357_P01 Score: 1
GRMZM2G138579_P01 Score: 1
GRMZM2G138579_P02 Score: 1
GRMZM2G108288_P03 Score: 0.938
GRMZM2G099216_P02 Score: 0.912

Expression data

Expressed Sequence Tags

At.49737
Arabidopsis thaliana DNA binding (AT4G22140) mRNA, complete cds /cds=p(280,954) /gb=NM_001036618
At.70103
Arabidopsis thaliana SHL1 (SHORT LIFE) (SHL1) mRNA, complete cds /cds=p(149,835) /gb=NM_120070
Hv.10178
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf112c09, mRNA sequence /gb=AK251264
Hv.18292
HVSMEb0018I16f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0018I16f, mRNA sequence /clone=HVSMEb0018I16f /gb=BG300821
Hv.26
H.vulgare (Dbg576) ES43 mRNA /cds=p(102,785) /gb=X77575
Mtr.14449
EST1227063 MTY Medicago truncatula cDNA clone MTYB227, mRNA sequence /clone=MTYB227 /gb=DW018102
Mtr.2619
AC3801 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617660
Os.12947
Oryza sativa Japonica Group cDNA clone:001-125-G12, full insert sequence /cds=p(91,741) /gb=AK064072
Os.33074
Oryza sativa Japonica Group cDNA clone:J033069K07, full insert sequence /gb=AK101850
Os.36050
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN051A11, full insert sequence /gb=CT833335
Os.7181
CT842817 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG101, mRNA sequence /clone=CONTIG101 /gb=CT842817
Pba.8233
WS02522.BR_H02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_H02 5', mRNA sequence /clone=WS02522_H02 /clone_end=5' /gb=DT478315
Ppa.19250
Physcomitrella patens subsp. patens BAH-PHD domain-containing protein (EBP1502) mRNA, complete cds /cds=p(152,811) /gb=XM_001781544
Ppa.8423
Physcomitrella patens subsp. patens BAH-PHD domain-containing protein (EBP1506) mRNA, complete cds /cds=p(488,1057) /gb=XM_001766982
Pth.8233
WS02522.BR_H02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_H02 5', mRNA sequence /clone=WS02522_H02 /clone_end=5' /gb=DT478315
Ptp.4563
UK118TB08.3pR Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA clone UK118TB08 3', mRNA sequence /clone=UK118TB08 /clone_end=3' /gb=DN490347
Sbi.12977
RHOH1_15_C12.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_15_C12_A002 3', mRNA sequence /clone=RHOH1_15_C12_A002 /clone_end=3' /gb=CN126092 /gi=45951013
Vvi.11767
WIN061.C21_B03 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_B03 3', mRNA sequence /clone=WIN061_B03 /clone_end=3' /gb=EC956881
Vvi.1563
WIN0538.C21_B04 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0538_B04 3', mRNA sequence /clone=WIN0538_B04 /clone_end=3' /gb=EC946218
Vvi.21720
WIN1144.C21_F18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1144_F18 3', mRNA sequence /clone=WIN1144_F18 /clone_end=3' /gb=EC992062

Domain Architecture

BAH PF01426 420725
DomainStartEndBit scoreE-value
BAH21136134.63.1e-37
PHD14018951.62.9e-12

Sequences

protein sequence
transcript sequence