Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 422013

Identification

Species:
Populus trichocarpa
Gene model
422013
Description
gw1.XII.473.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

15492 Score: 1

Populus trichocarpa

253824 Score: 1
422013 Score: 0.94

Micromonas pusilla CCMP1545

9563 Score: 1

Micromonas sp. RCC299

55695 Score: 1

Ostreococcus tauri

22651 Score: 1

Populus trichocarpa

253824 Score: 1
422013 Score: 0.929

Expression data

Expressed Sequence Tags

At.24995
Arabidopsis thaliana AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor (AT-HSFB2B) mRNA, complete cds /cds=p(377,1510) /gb=NM_117235
At.5973
Arabidopsis thaliana AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A); DNA binding / transcription factor (AT-HSFB2A) mRNA, complete cds /cds=p(124,1023) /gb=NM_125595
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055

Domain Architecture

HSF_DNA-bind PF00447 422013
DomainStartEndBit scoreE-value
HSF_DNA-bind7171153.27.1e-43

Sequences