Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 422910

Identification

Species:
Populus trichocarpa
Gene model
422910
Description
gw1.XII.1370.1
Family
C3H
3D structure (top 5)
1DFC 2HES 3F3F 1P22 2PM7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495266 Score: 1

Arabidopsis thaliana

AT4G25440.1 Score: 1

Populus trichocarpa

422910 Score: 1
253741 Score: 0.909

Populus trichocarpa

422910 Score: 1
253741 Score: 0.918

Populus trichocarpa

422910 Score: 1
253741 Score: 0.901

Oryza sativa subsp. japonica

LOC_Os02g45480.1 Score: 1

Physcomitrella patens

3694 Score: 1

Sorghum bicolor

5055810 Score: 1

Vitis vinifera

GSVIVP00003102001 Score: 1

Zea mays

GRMZM2G037200_P02 Score: 1
GRMZM2G166990_P02 Score: 1

Expression data

Expressed Sequence Tags

At.29648
Arabidopsis thaliana WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative (AT5G51980) mRNA, complete cds /cds=p(181,1494) /gb=NM_124577
At.30265
Arabidopsis thaliana WD-40 repeat family protein / zfwd3 protein (ZFWD3) (AT5G40880) mRNA, complete cds /cds=p(587,2005) /gb=NM_123453
At.32255
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX828187
At.64278
Arabidopsis thaliana WD-40 repeat family protein / zfwd4 protein (ZFWD4) (AT5G49200) mRNA, complete cds /cds=p(1,1260) /gb=NM_124297
Hv.21110
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf171d02, mRNA sequence /gb=AK252654
Os.23123
Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence /cds=p(295,1320) /gb=AK102324
Os.42888
Oryza sativa Japonica Group cDNA clone:J013092E23, full insert sequence /cds=p(1221,1988) /gb=AK111592
Pth.15887
WS01919.C21_D09 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_D09 3', mRNA sequence /clone=WS01919_D09 /clone_end=3' /gb=DT469886
Pth.2321
WS0231.B21_O21 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_O21 3', mRNA sequence /clone=WS0231_O21 /clone_end=3' /gb=CV239284
Ptp.815
T003G04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830086
Sbi.10177
PI1_32_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE366358
Vvi.1545
EST 3442 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT273H07 3', mRNA sequence /clone=TT273H07 /clone_end=3' /gb=BQ794504

Domain Architecture

zf-CCCH PF00642 422910
DomainStartEndBit scoreE-value
zf-CCCH12215.80.011
WD40286631.82.5e-06
WD4015118725.80.00016
WD4019122728.81.9e-05

Sequences