Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 424416

Identification

Species:
Populus trichocarpa
Gene model
424416
Description
gw1.87.30.1
Family
C3H
3D structure (top 5)
2D9N 2RHK 1M9O 2E5S 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

424416 Score: 1
249034 Score: 0.912

Sorghum bicolor

5040224 Score: 1

Populus trichocarpa

249034 Score: 1
424416 Score: 0.915

Selaginella moellendorffii

45667 Score: 1

Populus trichocarpa

249034 Score: 1
424416 Score: 1

Vitis vinifera

GSVIVP00025101001 Score: 1

Populus trichocarpa

249034 Score: 1
424416 Score: 1

Zea mays

GRMZM2G100794_P01 Score: 1
GRMZM2G146514_P01 Score: 1
GRMZM2G146514_P02 Score: 0.97
GRMZM2G146514_P03 Score: 0.909

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Ppa.20528
CAYY34829.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY34829 5', mRNA sequence /clone=CAYY34829 /clone_end=5' /gb=FC363526
Sbi.1345
NIT1_29_E12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_29_E12_A002 5', mRNA sequence /clone=NIT1_29_E12_A002 /clone_end=5' /gb=CF434363 /gi=34447064
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 424416
DomainStartEndBit scoreE-value
zf-CCCH234944.14.9e-10
zf-CCCH689444.24.6e-10
zf-CCCH11414043.29.5e-10
zf-CCCH27530145.71.7e-10
zf-CCCH32134747.64.4e-11

Sequences