Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 424492

Identification

Species:
Populus trichocarpa
Gene model
424492
Description
gw1.87.106.1
Family
TRAF
3D structure (top 5)
2IF5 2Z8H 1R29 2PPI 1BUO
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

348708 Score: 1

Arabidopsis thaliana

AT3G56230.1 Score: 1

Carica papaya

evm.TU.supercontig_19.99 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.971

Physcomitrella patens

118125 Score: 1

Sorghum bicolor

5005188 Score: 1

Selaginella moellendorffii

92030 Score: 1

Vitis vinifera

GSVIVP00029399001 Score: 1

Zea mays

GRMZM2G048192_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43588
Arabidopsis thaliana speckle-type POZ protein-related (AT3G56230) mRNA, complete cds /cds=p(131,979) /gb=NM_115481
Ptp.5870
G086P93.5pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G086P93 5', mRNA sequence /clone=G086P93 /clone_end=5' /gb=DN493652

Domain Architecture

BTB PF00651 424492
DomainStartEndBit scoreE-value
BTB1312591.62.5e-24

Sequences

protein sequence
transcript sequence