Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 429547

Identification

Species:
Selaginella moellendorffii
Gene model
429547
Description
fgenesh2_pg.C_scaffold_116000037
Family
SNF2
3D structure (top 5)
1Z5Z 1Z63 1WP9 3DMQ 2FWR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475211 Score: 1

Arabidopsis thaliana

AT1G61140.3 Score: 1
AT1G61140.1 Score: 0.993

Carica papaya

evm.TU.supercontig_27.89 Score: 1

Coccomyxa sp. C-169

70968 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g57110.2 Score: 1
LOC_Os01g57110.1 Score: 0.994

Physcomitrella patens

189373 Score: 1

Populus trichocarpa

234045 Score: 1

Sorghum bicolor

5053814 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.01
GSVIVP00004267001 Score: 1
GSVIVP00010086001 Score: 1

Zea mays

GRMZM2G149157_P02 Score: 1

Expression data

Expressed Sequence Tags

At.36526
Arabidopsis thaliana EDA16 (embryo sac development arrest 16) (EDA16) mRNA, complete cds /cds=p(742,4110) /gb=NM_001124053
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Ppa.15038
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112295) mRNA, partial cds /cds=p(1,2190) /gb=XM_001752316
Ppa.2900
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1528) mRNA, complete cds /cds=p(1,4158) /gb=XM_001770935

Domain Architecture

SNF2_N PF00176 429547
DomainStartEndBit scoreE-value
SNF2_N292646145.81.3e-40
Helicase_C82390179.71e-20

Sequences