Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 43427

Identification

Species:
Coccomyxa sp. C-169
Gene model
43427
Description
estExt_Genewise1Plus.C_110093
Family
GNAT
3D structure (top 5)
1YGH 1Z4R 1QST 2I7K 2DKW
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485863 Score: 1

Arabidopsis thaliana

AT3G54610.1 Score: 1

Cyanidioschyzon merolae

CMM151C Score: 1

Chlorella sp. NC64A

55490 Score: 1

Carica papaya

evm.TU.supercontig_52.97 Score: 1

Chlamydomonas reinhardtii

142398 Score: 1

Micromonas pusilla CCMP1545

1939 Score: 1

Micromonas sp. RCC299

57888 Score: 1

Ostreococcus lucimarinus

33057 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28040.1 Score: 1

Ostreococcus tauri

34304 Score: 1

Physcomitrella patens

130814 Score: 1

Populus trichocarpa

205656 Score: 1

Sorghum bicolor

5048857 Score: 1

Selaginella moellendorffii

139448 Score: 1

Vitis vinifera

GSVIVP00023830001 Score: 1

Zea mays

GRMZM2G046021_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10490
Arabidopsis thaliana GCN5 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1); H3 histone acetyltransferase (GCN5) mRNA, complete cds /cds=p(34,1740) /gb=NM_115318
Cre.17748
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(93,1646) /gb=XM_001696318
Os.21782
Oryza sativa Japonica Group cDNA clone:J023078H10, full insert sequence /cds=p(116,1651) /gb=AK111779
Ppa.9494
Physcomitrella patens subsp. patens histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 (HAG1501) mRNA, partial cds /cds=p(1,1245) /gb=XM_001766326

Domain Architecture

Acetyltransf_1 PF00583 43427
DomainStartEndBit scoreE-value
Acetyltransf_116924543.58.1e-10
Bromodomain362446126.39.8e-35

Sequences