Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 44246

Identification

Species:
Coccomyxa sp. C-169
Gene model
44246
Description
estExt_Genewise1Plus.C_140250
Family
Sigma70-like
3D structure (top 5)
1L0O 2A6H 1L9Z 1RP3 1SIG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

909325 Score: 1

Arabidopsis thaliana

AT5G13730.1 Score: 1

Chlorella sp. NC64A

35462 Score: 1

Carica papaya

evm.TU.supercontig_125.40 Score: 1

Micromonas pusilla CCMP1545

19393 Score: 1

Micromonas sp. RCC299

109173 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1.01
LOC_Os03g16430.2 Score: 1

Ostreococcus tauri

18021 Score: 1

Populus trichocarpa

202953 Score: 1

Selaginella moellendorffii

117159 Score: 1

Vitis vinifera

GSVIVP00022983001 Score: 1

Coccomyxa sp. C-169

18553 Score: 1
44246 Score: 1

Zea mays

GRMZM2G144196_P01 Score: 1
GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Expression data

Expressed Sequence Tags

Ppa.1
Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872

Domain Architecture

Sigma70_r2 PF04542 44246
DomainStartEndBit scoreE-value
Sigma70_r2168694.83e-25
Sigma70_r39017137.74.6e-08
Sigma70_r418723964.15.1e-16

Sequences