Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 45667

Identification

Species:
Selaginella moellendorffii
Gene model
45667
Description
gw1.151.82.1
Family
C3H
3D structure (top 5)
2RPP 1M9O 2D9N 2E5S 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488510 Score: 1

Arabidopsis thaliana

AT5G16540.1 Score: 1
AT5G16540.2 Score: 0.958
AT5G16540.3 Score: 0.914

Carica papaya

evm.TU.supercontig_346.1 Score: 1

Chlamydomonas reinhardtii

421287 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g28270.1 Score: 1
LOC_Os11g28270.2 Score: 1

Physcomitrella patens

14712 Score: 1

Populus trichocarpa

249034 Score: 1
424416 Score: 0.915

Sorghum bicolor

4754425 Score: 1

Vitis vinifera

GSVIVP00025101001 Score: 1

Zea mays

GRMZM2G041825_P01 Score: 1
GRMZM2G107491_P01 Score: 1
GRMZM2G041825_P02 Score: 0.905
GRMZM2G107491_P02 Score: 0.905

Expression data

Expressed Sequence Tags

Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 45667
DomainStartEndBit scoreE-value
zf-CCCH103640.56.8e-09
zf-CCCH558145.32.5e-10
zf-CCCH10112746.78.9e-11
zf-CCCH20423047.84.3e-11
zf-CCCH25027638.33e-08

Sequences