Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 470083

Identification

Species:
Arabidopsis lyrata
Gene model
470083
Description
fgenesh2_kg.1__37__AT1G01920.2
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G01920.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g03676.1 Score: 1

Physcomitrella patens

123452 Score: 1

Populus trichocarpa

244302 Score: 1

Sorghum bicolor

4769441 Score: 1

Selaginella moellendorffii

52721 Score: 1

Vitis vinifera

GSVIVP00026746001 Score: 1

Zea mays

GRMZM2G078458_P01 Score: 1
GRMZM2G078458_P03 Score: 1
GRMZM2G078458_P02 Score: 0.977

Chlamydomonas reinhardtii

142793 Score: 1

Expression data

Expressed Sequence Tags

At.42629
Arabidopsis thaliana SET domain-containing protein (AT1G01920) mRNA, complete cds /cds=p(18,1736) /gb=NM_100072
Os.44812
Oryza sativa Japonica Group cDNA clone:J033110L01, full insert sequence /gb=AK122004
Vvi.16518
CAbud0001_IIIR_F07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0001_IIIR_F07 3', mRNA sequence /clone=CAbud0001_IIIR_F07 /clone_end=3' /gb=CF510936

Domain Architecture

SET PF00856 470083
DomainStartEndBit scoreE-value
SET13309135.91.3e-37

Sequences