Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 470915

Identification

Species:
Arabidopsis lyrata
Gene model
470915
Description
fgenesh2_kg.1__869__AT1G08540.1
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 1L9Z 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G08540.1 Score: 1

Cyanidioschyzon merolae

CMQ213C Score: 1

Carica papaya

evm.TU.supercontig_73.28 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g26160.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

780378 Score: 1
834586 Score: 1

Sorghum bicolor

5011593 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Os.88896
Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821
Vvi.15436
WIN021.C21_B06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN021_B06 3', mRNA sequence /clone=WIN021_B06 /clone_end=3' /gb=EC923412

Domain Architecture

Sigma70_r1_2 PF00140 470915
DomainStartEndBit scoreE-value
Sigma70_r1_225729334.54.3e-07
Sigma70_r2336406852.7e-22
Sigma70_r34104921014e-27
Sigma70_r450455797.64.3e-26

Sequences