Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 472410

Identification

Species:
Arabidopsis lyrata
Gene model
472410
Description
fgenesh2_kg.1__2364__AT1G21700.1
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G21700.1 Score: 1

Chlorella sp. NC64A

134832 Score: 1

Micromonas sp. RCC299

104814 Score: 1
112657 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g08080.1 Score: 1

Physcomitrella patens

163618 Score: 1

Populus trichocarpa

559267 Score: 1

Sorghum bicolor

4822356 Score: 1

Vitis vinifera

GSVIVP00015425001 Score: 1

Zea mays

GRMZM2G139760_P01 Score: 1
GRMZM2G139760_P02 Score: 0.988
GRMZM2G139760_P04 Score: 0.981

Expression data

Expressed Sequence Tags

At.41645
Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds /cds=p(160,2583) /gb=AY091026
Hv.29353
HU02H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02H10 5-PRIME, mRNA sequence /clone=HU02H10 /clone_end=5' /gb=BQ465032
Os.9655
Oryza sativa (japonica cultivar-group) Os12g0176700 (Os12g0176700) mRNA, complete cds /cds=p(1,1809) /gb=NM_001072830
Vvi.1002
S2B11008 Buds (VvS2) Vitis vinifera cDNA clone S2B11008, mRNA sequence /clone=S2B11008 /gb=EE077908

Domain Architecture

SWIRM PF04433 472410
DomainStartEndBit scoreE-value
SWIRM170259120.65.2e-33
Myb_DNA-binding39443946.21.3e-10

Sequences