Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 472599

Identification

Species:
Arabidopsis lyrata
Gene model
472599
Description
fgenesh2_kg.1__2553__AT1G23380.2
Family
HB
3D structure (top 5)
2DMN 1X2N 1DU6 1B72 1MNM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G23380.2 Score: 1

Carica papaya

evm.TU.supercontig_254.4 Score: 1

Ostreococcus lucimarinus

5313 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g19694.1 Score: 1
LOC_Os05g03884.1 Score: 1

Populus trichocarpa

658310 Score: 1

Sorghum bicolor

143200 Score: 1

Vitis vinifera

GSVIVP00002753001 Score: 1

Zea mays

GRMZM2G051366_P02 Score: 1
GRMZM2G094241_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.17576
Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds /cds=p(165,1103) /gb=EF128061
Mtr.22850
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-11 unknown mRNA /cds=p(97,651) /gb=BT052114
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Ptp.5742
N051H06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N051H06 5', mRNA sequence /clone=N051H06 /clone_end=5' /gb=CK110021
Sbi.13097
Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial cds /cds=p(1,1044) /gb=DQ317417
Vvi.11375
VVI036D10_588594 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI036D10 5, mRNA sequence /clone=VVI036D10 /clone_end=5' /gb=DT019377
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 472599
DomainStartEndBit scoreE-value
KNOX18312982.91.2e-21
KNOX2136187111.62.6e-30
ELK22624730.66.4e-06
Homeobox24930810.0095

Sequences