Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 472886

Identification

Species:
Arabidopsis lyrata
Gene model
472886
Description
fgenesh2_kg.1__2840__AT1G24610.1
Family
SET
3D structure (top 5)
2H21 1N3J 2F69 3F9X 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G24610.1 Score: 1

Chlorella sp. NC64A

139898 Score: 1

Carica papaya

evm.TU.supercontig_2.194 Score: 1

Coccomyxa sp. C-169

84193 Score: 1

Micromonas sp. RCC299

63874 Score: 1

Ostreococcus lucimarinus

40473 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g50100.1 Score: 1

Populus trichocarpa

766181 Score: 1

Sorghum bicolor

5055610 Score: 1

Selaginella moellendorffii

81798 Score: 1

Vitis vinifera

GSVIVP00030583001 Score: 1

Zea mays

GRMZM2G055381_P01 Score: 1
GRMZM2G063316_P01 Score: 1
GRMZM2G142634_P01 Score: 1

Chlamydomonas reinhardtii

154505 Score: 1

Expression data

Expressed Sequence Tags

At.15911
Arabidopsis thaliana SET domain-containing protein (AT1G24610) mRNA, complete cds /cds=p(36,1466) /gb=NM_102303
Hv.4579
SFR004.D04F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum vulgare subsp. vulgare cDNA clone SF, mRNA sequence /clone=SF /gb=BE437497
Mtr.9242
AC0738 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615651
Os.12016
Oryza sativa Japonica Group cDNA clone:J033058C09, full insert sequence /cds=p(98,1558) /gb=AK121645
Sbi.16366
HS1_59_E11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_59_E11_A012 5' similar to mitochondrial genome and/or plastid genome, mRNA sequence /clone=HS1_59_E11_A012 /clone_end=5' /gb=CD211373 /gi=30947395
Vvi.11931
WIN086.C21_L05 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN086_L05 3', mRNA sequence /clone=WIN086_L05 /clone_end=3' /gb=EC963902

Domain Architecture

SET PF00856 472886
DomainStartEndBit scoreE-value
SET29283185.81.2e-52
Rubis-subs-bind323448127.64e-35

Sequences