Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 473061

Identification

Species:
Arabidopsis lyrata
Gene model
473061
Description
fgenesh2_kg.1__3015__AT1G28420.1
Family
HB
3D structure (top 5)
2R5Y 2DJN 2CRA 2H1K 1B8I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G28420.1 Score: 1

Carica papaya

evm.TU.supercontig_27.2 Score: 1

Populus trichocarpa

197907 Score: 1

Selaginella moellendorffii

447019 Score: 1

Expression data

Expressed Sequence Tags

At.27788
Arabidopsis thaliana HB-1 (homeobox-1); transcription factor (HB-1) mRNA, complete cds /cds=p(135,5252) /gb=NM_102610
Hv.16581
BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal41c06 5', mRNA sequence /clone=baal41c06 /clone_end=5' /gb=BJ473219
Os.6086
Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence /gb=AK121237
Os.81796
SSHD126 Rice callus and differential tissue SSH library Oryza sativa cDNA, mRNA sequence /gb=CA923264

Domain Architecture

Homeobox PF00046 473061
DomainStartEndBit scoreE-value
Homeobox4197761.4e-19
DDT5506091183.1e-32

Sequences