Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 473420

Identification

Species:
Arabidopsis lyrata
Gene model
473420
Description
fgenesh2_kg.1__3374__AT1G32330.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G32330.1 Score: 1

Carica papaya

evm.TU.supercontig_90.13 Score: 1

Coccomyxa sp. C-169

75510 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g63750.1 Score: 1

Physcomitrella patens

44465 Score: 1

Populus trichocarpa

813327 Score: 1

Sorghum bicolor

5047670 Score: 1

Vitis vinifera

GSVIVP00015710001 Score: 1

Expression data

Expressed Sequence Tags

At.38933
Arabidopsis thaliana ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2) (ATHSFA2) mRNA, complete cds /cds=p(371,1243) /gb=NM_001124916
At.48256
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH62ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX816680
At.6312
Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds /cds=p(162,1382) /gb=AY045974
Cre.13799
Chlamydomonas reinhardtii heat shock factor 1 (HSF1) mRNA, complete cds /cds=p(172,2577) /gb=EF136572
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.10942
Oryza sativa Japonica Group cDNA clone:J023077L03, full insert sequence /gb=AK072391
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pba.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Ppa.23110
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108327) mRNA, complete cds /cds=p(1,1224) /gb=XM_001778961
Ppa.23943
CAYY25595.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY25595 5', mRNA sequence /clone=CAYY25595 /clone_end=5' /gb=FC349157
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Pth.9383
Populus trichocarpa clone WS01230_L11 unknown mRNA /cds=p(80,1258) /gb=EF147413
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 473420
DomainStartEndBit scoreE-value
HSF_DNA-bind38216347.62.4e-101

Sequences