Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4748868

Identification

Species:
Sorghum bicolor
Gene model
4748868
Description
estExt_Genewise1.C_chr_28920
Family
SET
3D structure (top 5)
2R3A 1H3I 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

25365 Score: 1

Carica papaya

evm.TU.supercontig_187.21 Score: 1

Chlamydomonas reinhardtii

115484 Score: 1

Coccomyxa sp. C-169

34476 Score: 1

Micromonas sp. RCC299

73010 Score: 1

Ostreococcus lucimarinus

8226 Score: 1

Ostreococcus tauri

16326 Score: 1

Physcomitrella patens

212943 Score: 1

Selaginella moellendorffii

78627 Score: 1

Vitis vinifera

GSVIVP00032732001 Score: 1

Zea mays

GRMZM2G024477_P01 Score: 1
GRMZM2G024477_P02 Score: 1

Expression data

Expressed Sequence Tags

Os.87730
Oryza sativa Japonica Group cDNA clone:002-110-B02, full insert sequence /gb=AK112101
Os.93737
82233rsicen_20540.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK082312
Os.94012
CI512965 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa (japonica cultivar-group) cDNA clone J08B0301M06M3 3', mRNA sequence /clone=J08B0301M06M3 /clone_end=3' /gb=CI512965
Ppa.21072
CAYY5174.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY5174 5', mRNA sequence /clone=CAYY5174 /clone_end=5' /gb=FC367220
Sbi.4414
FE1_16_G08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_16_G08_A002 3', mRNA sequence /clone=FE1_16_G08_A002 /clone_end=3' /gb=CF071203 /gi=33107862

Domain Architecture

SET PF00856 4748868
DomainStartEndBit scoreE-value
SET842171621.8e-45

Sequences