Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 475053

Identification

Species:
Arabidopsis lyrata
Gene model
475053
Description
fgenesh2_kg.2__183__AT1G62990.1
Family
HB
3D structure (top 5)
1X2N 1PUF 2DMN 1DU6 1K61
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G62990.1 Score: 1

Carica papaya

evm.TU.supercontig_29.28 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g03164.1 Score: 1
LOC_Os03g03164.2 Score: 1

Populus trichocarpa

180608 Score: 1

Sorghum bicolor

4746128 Score: 1

Vitis vinifera

GSVIVP00001072001 Score: 1

Zea mays

GRMZM2G159431_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20704
Arabidopsis thaliana KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor (KNAT5) mRNA, complete cds /cds=p(63,1214) /gb=NM_119356
At.5376
Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor (KNAT3) mRNA, complete cds /cds=p(135,1430) /gb=NM_122431
At.5377
Arabidopsis thaliana At5g11060 mRNA for putative HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4), complete cds, clone: RAFL19-58-H14 /cds=p(291,1472) /gb=AK118296
At.70104
Arabidopsis thaliana homeodomain transcription factor KNAT7 (KNAT7) mRNA, complete cds /cds=p(77,952) /gb=AF308451
Hv.12877
HDP31P10w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP31P10, mRNA sequence /clone=HDP31P10 /gb=EX572458
Hv.18479
Hordeum vulgare knotted 7 (kn7) mRNA, complete cds /cds=p(78,1100) /gb=AF544051
Hv.23550
HV_CEb0001A05f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0001A05f, mRNA sequence /clone=HV_CEb0001A05f /gb=BE213693
Mtr.11825
Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds /cds=p(114,1229) /gb=EF128060
Mtr.13688
MTYER01TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV262058
Mtr.14192
Medicago truncatula class II KNOX homeobox transcription factor (KNOX3) mRNA, complete cds /cds=p(229,1548) /gb=EF128058
Mtr.2602
Medicago truncatula class II KNOX homeobox transcription factor (KNOX4) mRNA, complete cds /cds=p(361,1239) /gb=EF128059
Os.1983
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence /gb=CT835439
Os.4164
Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds /cds=p(195,1139) /gb=AB061819
Os.4608
Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds /cds=p(55,1008) /gb=AB061818
Os.5992
Oryza sativa Japonica Group cDNA clone:J013132C10, full insert sequence /gb=AK111645
Pba.1589
WS02514.B21.1_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_A11 3', mRNA sequence /clone=WS02514_A11 /clone_end=3' /gb=CV242063
Ppa.26184
Physcomitrella patens subsp. patens KNOX class 2 protein MKN1-3 (MKN1-3) mRNA, complete cds /cds=p(1,1602) /gb=XM_001772671
Pth.15706
Populus trichocarpa clone PX0015_H02 unknown mRNA /cds=p(570,1475) /gb=EF144292
Sbi.4698
WOUND1_60_H08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_60_H08_A002 3', mRNA sequence /clone=WOUND1_60_H08_A002 /clone_end=3' /gb=CN149043 /gi=45990504
Vvi.3109
WIN063.C21_L18 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN063_L18 3', mRNA sequence /clone=WIN063_L18 /clone_end=3' /gb=EC957799

Domain Architecture

KNOX1 PF03790 475053
DomainStartEndBit scoreE-value
KNOX1277173.86.4e-19
KNOX28013586.11.2e-22
ELK19421525.90.00017

Sequences