Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 47533

Identification

Species:
Physcomitrella patens
Gene model
47533
Description
gw1.103.78.1
Family
CSD
3D structure (top 5)
1H95 1MJC 1C9O 2K5N 2KCM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491032 Score: 1

Physcomitrella patens

183211 Score: 1
47533 Score: 1

Arabidopsis thaliana

AT2G21060.1 Score: 1
AT4G36020.1 Score: 1

Physcomitrella patens

180264 Score: 1
47533 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Zea mays

GRMZM2G090076_P01 Score: 1
GRMZM2G179385_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Os.54054
Oryza sativa Japonica Group cDNA, clone: J100044F18, full insert sequence /gb=AK243227
Ppa.15638
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180264) mRNA, complete cds /cds=p(263,826) /gb=XM_001760093
Ppa.15653
DC950905 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs26d21 3', mRNA sequence /clone=ppgs26d21 /clone_end=3' /gb=DC950905
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837

Domain Architecture

CSD PF00313 47533
DomainStartEndBit scoreE-value
CSD269117.54.1e-32
zf-CCHC12914635.71.6e-07
zf-CCHC16317819.20.0019

Sequences