Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4754116

Identification

Species:
Sorghum bicolor
Gene model
4754116
Description
estExt_Genewise1.C_chr_310151
Family
C2H2
3D structure (top 5)
2DLQ 1TF6 2I13 2JP9 2RPC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473593 Score: 1

Arabidopsis thaliana

AT1G34370.1 Score: 1
AT1G34370.2 Score: 1

Carica papaya

evm.TU.supercontig_66.59 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g65080.1 Score: 1
LOC_Os01g65080.2 Score: 1
LOC_Os01g65080.3 Score: 1
LOC_Os01g65080.4 Score: 1

Populus trichocarpa

678093 Score: 1

Vitis vinifera

GSVIVP00031791001 Score: 1

Zea mays

GRMZM2G075956_P01 Score: 1
GRMZM2G075956_P02 Score: 1

Expression data

Expressed Sequence Tags

At.64018
Arabidopsis thaliana STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / transcription factor/ zinc ion binding (STOP1) mRNA, complete cds /cds=p(189,1688) /gb=NM_179415
Hv.21079
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf151p02, mRNA sequence /gb=AK252406
Mtr.4260
EST639817 MTUS Medicago truncatula cDNA clone MTUS-49B2, mRNA sequence /clone=MTUS-49B2 /gb=CA922099
Os.50556
Oryza sativa Japonica Group cDNA clone:J033099G14, full insert sequence /gb=AK121826
Os.51657
Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence /gb=AK063290
Os.5755
Oryza sativa Japonica Group cDNA clone:J023088A12, full insert sequence /gb=AK071320
Os.75821
Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence /gb=AK287605
Os.76617
Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence /gb=AK243285
Os.79948
Oryza sativa (japonica cultivar-group) Os02g0573000 (Os02g0573000) mRNA, complete cds /cds=p(1,1683) /gb=NM_001053734
Os.8796
Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence /cds=p(1944,3512) /gb=AK100840
Sbi.343
ANR1_3_C09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_3_C09_A002 5', mRNA sequence /clone=ANR1_3_C09_A002 /clone_end=5' /gb=CX606534 /gi=57804147

Domain Architecture

zf-C2H2 PF00096 4754116
DomainStartEndBit scoreE-value
zf-C2H227830028.72.3e-05

Sequences