Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 475777

Identification

Species:
Arabidopsis lyrata
Gene model
475777
Description
fgenesh2_kg.2__907__AT1G66810.1
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 3D2N 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G66810.1 Score: 1

Carica papaya

evm.TU.supercontig_170.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g45730.1 Score: 1

Sorghum bicolor

5061012 Score: 1

Zea mays

GRMZM2G157927_P01 Score: 1
GRMZM2G157927_P02 Score: 0.984

Expression data

Expressed Sequence Tags

At.70746
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G66810) mRNA, complete cds /cds=p(74,1006) /gb=NM_105352
Pba.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Pth.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Vvi.4930
CAB2SG0006_IaF_B07 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0006_IaF_B07 5', mRNA sequence /clone=CAB2SG0006_IaF_B07 /clone_end=5' /gb=CB349575

Domain Architecture

zf-CCCH PF00642 475777
DomainStartEndBit scoreE-value
zf-CCCH25127753.77.1e-13
zf-CCCH28931522.50.0016

Sequences