Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 475938

Identification

Species:
Arabidopsis lyrata
Gene model
475938
Description
fgenesh2_kg.2__1068__AT1G68200.1
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RPP 3D2N 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G68200.1 Score: 1

Vitis vinifera

GSVIVP00030418001 Score: 1

Zea mays

GRMZM2G149347_P01 Score: 1

Expression data

Expressed Sequence Tags

At.52430
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G68200) mRNA, complete cds /cds=p(1,927) /gb=NM_105491
Mtr.14467
MTGland_A005_2007-02-17/MTGlandA005_A12_048_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence /gb=ES611220
Os.30567
Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence /gb=AK108658
Pba.2371
WS0193.B21_M17 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_M17 3', mRNA sequence /clone=WS0193_M17 /clone_end=3' /gb=CV231189
Pba.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Pth.2371
WS0193.B21_M17 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_M17 3', mRNA sequence /clone=WS0193_M17 /clone_end=3' /gb=CV231189
Pth.2501
WS01914.B21_C20 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C20 3', mRNA sequence /clone=WS01914_C20 /clone_end=3' /gb=CV229704
Vvi.4930
CAB2SG0006_IaF_B07 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0006_IaF_B07 5', mRNA sequence /clone=CAB2SG0006_IaF_B07 /clone_end=5' /gb=CB349575

Domain Architecture

zf-CCCH PF00642 475938
DomainStartEndBit scoreE-value
zf-CCCH22525151.72.8e-12
zf-CCCH26328927.74.9e-05

Sequences