Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 476108

Identification

Species:
Arabidopsis lyrata
Gene model
476108
Description
fgenesh2_kg.2__1238__AT1G69780.1
Family
HB
3D structure (top 5)
2HI3 1NK2 2E1O 2CUE 1JGG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G69780.1 Score: 1

Carica papaya

evm.TU.supercontig_183.30 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g07450.1 Score: 1

Populus trichocarpa

820741 Score: 1

Sorghum bicolor

4745673 Score: 1

Vitis vinifera

GSVIVP00037014001 Score: 1

Zea mays

GRMZM2G139963_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19698
Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds /cds=p(398,1336) /gb=AY074293
At.23736
Arabidopsis thaliana homeodomain leucine-zipper protein ATHB13 mRNA, complete cds /cds=p(200,1084) /gb=AF208044
At.43561
Arabidopsis thaliana ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor (ATHB23) mRNA, complete cds /cds=p(207,974) /gb=NM_102460
At.68137
987288 CERES-148 Arabidopsis thaliana cDNA clone 147623 3', mRNA sequence /clone=147623 /clone_end=3' /gb=DR380834
Hv.12185
BES1824102g23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010G232 5-PRIME, mRNA sequence /clone=MPMGp2010G23102 /clone_end=5' /gb=CK122216
Mtr.15423
MTYEH21TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261238
Mtr.17800
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA /cds=m(1,800) /gb=BT051961
Mtr.1797
EST646165 HOGA Medicago truncatula cDNA clone HOGA-27L15, mRNA sequence /clone=HOGA-27L15 /gb=CB893373
Os.59424
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035D07, full insert sequence /gb=CT837907
Os.70514
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence /gb=CT837749
Pba.10856
WS02542.B21_K17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_K17 3', mRNA sequence /clone=WS02542_K17 /clone_end=3' /gb=DT489599
Pth.10856
WS01227.B21.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_E04 3', mRNA sequence /clone=WS01227_E04 /clone_end=3' /gb=CV237288
Pth.12518
WS01224.B21.1_M07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_M07 3', mRNA sequence /clone=WS01224_M07 /clone_end=3' /gb=CV236620

Domain Architecture

Homeobox PF00046 476108
DomainStartEndBit scoreE-value
Homeobox8513969.99.5e-18
HALZ14018474.34.4e-19

Sequences