Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4769185

Identification

Species:
Sorghum bicolor
Gene model
4769185
Description
estExt_Genewise1.C_chr_98029
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os05g50980.1 Score: 1

Vitis vinifera

GSVIVP00030097001 Score: 1

Expression data

Expressed Sequence Tags

At.32744
Arabidopsis thaliana PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) (PTAC14) mRNA, complete cds /cds=p(28,1479) /gb=NM_118132
Hv.9359
AV910596 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vulgare subsp. vulgare cDNA clone baak1a17 5', mRNA sequence /clone=baak1a17 /clone_end=5' /gb=AV910596
Os.89760
61165rsicek_4462.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK059170
Os.9142
Oryza sativa Japonica Group cDNA clone:J013060L04, full insert sequence /gb=AK066321
Ppa.13841
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_137034) mRNA, partial cds /cds=p(1,1230) /gb=XM_001771097
Sbi.8054
WOUND1_46_F03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_46_F03_A002 5', mRNA sequence /clone=WOUND1_46_F03_A002 /clone_end=5' /gb=CN147052 /gi=45987390
Vvi.10999
VVB186A12_429439 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB186A12 5, mRNA sequence /clone=VVB186A12 /clone_end=5' /gb=CD713086

Domain Architecture

SET PF00856 4769185
DomainStartEndBit scoreE-value
SET9734346.97.9e-11

Sequences