Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4771445

Identification

Species:
Sorghum bicolor
Gene model
4771445
Description
estExt_Genewise1.C_chr_107530
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

883225 Score: 1

Arabidopsis thaliana

AT1G56010.2 Score: 1

Carica papaya

evm.TU.supercontig_10.22 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g46270.1 Score: 1

Populus trichocarpa

218417 Score: 1

Vitis vinifera

GSVIVP00025798001 Score: 1

Zea mays

GRMZM2G063522_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23511
Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds /cds=p(196,1203) /gb=BT005713
At.27906
Arabidopsis thaliana ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor (ANAC046) mRNA, complete cds /cds=p(212,1228) /gb=NM_111277
At.32009
Arabidopsis thaliana ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor (ANAC074) mRNA, complete cds /cds=p(174,1232) /gb=NM_118995
At.48312
Arabidopsis thaliana NAC1 (Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22); transcription factor (NAC1) mRNA, complete cds /cds=p(138,1112) /gb=NM_104479
At.7461
Arabidopsis thaliana ANAC100/ATNAC5 (Arabidopsis NAC domain containing protein 100); transcription factor (ANAC100/ATNAC5) mRNA, complete cds /cds=p(209,1219) /gb=NM_125536
Hv.21779
Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (nac1 gene) /cds=p(361,1275) /gb=AM500855
Hv.25370
HO01L09w HO Hordeum vulgare cDNA clone HO01L09 3-PRIME, mRNA sequence /clone=HO01L09 /clone_end=3' /gb=CK565851
Hv.28795
HDP27L22w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP27L22, mRNA sequence /clone=HDP27L22 /gb=EX573211
Mtr.3392
EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence /clone=MTYAW81 /gb=DW017692
Os.51378
Oryza sativa Japonica Group cDNA clone:001-105-G11, full insert sequence /cds=p(105,1076) /gb=AK062675
Os.51762
Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence /cds=p(287,1201) /gb=AK063648
Os.53228
Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence /gb=AK071464
Os.80160
Oryza sativa (japonica cultivar-group) Os04g0619000 (Os04g0619000) mRNA, complete cds /cds=p(1,981) /gb=NM_001060430
Os.87559
CT854494 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCPI214C18, mRNA sequence /clone=OSIGCPI214C18 /gb=CT854494
Ptp.4986
I018P65P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence /gb=BI123181
Sbi.2198
ETH1_14_G07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_14_G07_A002 5', mRNA sequence /clone=ETH1_14_G07_A002 /clone_end=5' /gb=CD429611 /gi=31345254
Vvi.2352
S7B00671 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B00671, mRNA sequence /clone=S7B00671 /gb=EE093464

Domain Architecture

NAM PF02365 4771445
DomainStartEndBit scoreE-value
NAM13150251.52e-72

Sequences