Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 477377

Identification

Species:
Arabidopsis lyrata
Gene model
477377
Description
fgenesh2_kg.3__78__AT3G01470.1
Family
HB
3D structure (top 5)
1AU7 1ZQ3 2VI6 2DJN 1B72
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G01470.1 Score: 1

Carica papaya

evm.TU.supercontig_215.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g49700.1 Score: 1

Physcomitrella patens

120051 Score: 1

Populus trichocarpa

807937 Score: 1
661900 Score: 0.932

Sorghum bicolor

148717 Score: 1

Vitis vinifera

GSVIVP00020757001 Score: 1

Zea mays

GRMZM2G021339_P01 Score: 1
GRMZM2G143066_P01 Score: 1

Expression data

Expressed Sequence Tags

At.47815
Arabidopsis thaliana ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor (ATHB-1) mRNA, complete cds /cds=p(370,1188) /gb=NM_111013
At.72237
15661 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182P17T7, mRNA sequence /clone=182P17T7 /gb=H37532
Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Mtr.1376
MTYEC08TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260809
Mtr.4475
EST647871 HOGA Medicago truncatula cDNA clone HOGA-33D17, mRNA sequence /clone=HOGA-33D17 /gb=CB895079
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Os.57545
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence /gb=CT830627
Ppa.161
Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds /cds=p(1,821) /gb=AB028073
Vvi.17175
WIN0510.C21_K21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0510_K21 3', mRNA sequence /clone=WIN0510_K21 /clone_end=3' /gb=EC935875
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 477377
DomainStartEndBit scoreE-value
Homeobox6612077.74.1e-20
HALZ12116580.56e-21

Sequences