Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 477525

Identification

Species:
Arabidopsis lyrata
Gene model
477525
Description
fgenesh2_kg.3__226__AT3G02830.1
Family
C3H
3D structure (top 5)
1M9O 2CQE 2D9N 2E5S 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G02830.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g28270.1 Score: 1
LOC_Os11g28270.2 Score: 0.94

Physcomitrella patens

14712 Score: 1

Populus trichocarpa

249034 Score: 1

Sorghum bicolor

5040224 Score: 1

Vitis vinifera

GSVIVP00025101001 Score: 1

Zea mays

GRMZM2G100794_P01 Score: 1

Chlamydomonas reinhardtii

421287 Score: 1

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 477525
DomainStartEndBit scoreE-value
zf-CCCH416742.91.3e-09
zf-CCCH86112422.4e-09
zf-CCCH13215842.51.7e-09
zf-CCCH27530144.73.6e-10
zf-CCCH32134744.15.5e-10

Sequences