Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4776698

Identification

Species:
Sorghum bicolor
Gene model
4776698
Description
e_gw1.1.16593.1
Family
ARR-B
3D structure (top 5)
1K68 1XHF 3CFY 1DCF 2JK1
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_2.176 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g12350.1 Score: 1
LOC_Os03g12350.2 Score: 1
LOC_Os03g12350.4 Score: 1

Selaginella moellendorffii

444702 Score: 1

Vitis vinifera

GSVIVP00030597001 Score: 1

Zea mays

GRMZM2G099797_P01 Score: 1
GRMZM2G099797_P02 Score: 1
GRMZM2G099797_P03 Score: 1
GRMZM2G140585_P01 Score: 1
GRMZM2G140585_P02 Score: 1

Expression data

Expressed Sequence Tags

At.121
Arabidopsis thaliana ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator (ARR11) mRNA, complete cds /cds=p(240,1805) /gb=NM_105439
At.122
Arabidopsis thaliana ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (ARR10) mRNA, complete cds /cds=p(194,1852) /gb=NM_119343
At.19775
Arabidopsis thaliana ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator (ARR12) mRNA, complete cds /cds=p(1,1791) /gb=NM_128075
At.21955
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-13-O13 /cds=p(293,2287) /gb=AK176614
At.42470
Arabidopsis thaliana ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator (ARR14) mRNA, complete cds /cds=p(75,1223) /gb=NM_126237
At.48672
Arabidopsis thaliana ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (ARR1) mRNA, complete cds /cds=p(293,2365) /gb=NM_112561
Hv.19045
HVSMEg0008D24f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0008D24f, mRNA sequence /clone=HVSMEg0008D24f /gb=AW983121
Mtr.6502
EST648250 KV3 Medicago truncatula cDNA clone KV3-49B6, mRNA sequence /clone=KV3-49B6 /gb=CB891281
Os.11949
Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence /cds=p(258,2333) /gb=AK111864
Os.27847
Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence /cds=p(159,2039) /gb=AK100530
Os.5243
Oryza sativa Japonica Group cDNA clone:J013002L12, full insert sequence /gb=AK065276
Os.82062
AF53-Rpf_04_O22_T7_095.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0001510 5' similar to unknown, mRNA sequence /clone=C0001510 /clone_end=5' /gb=CA764787
Os.87872
Oryza sativa (japonica cultivar-group) Os06g0183100 (Os06g0183100) mRNA, complete cds /cds=p(884,2974) /gb=NM_001063521
Ppa.9285
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_123034) mRNA, partial cds /cds=p(1,786) /gb=XM_001760314
Sbi.12399
OX1_22_H03.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_22_H03_A002 3', mRNA sequence /clone=OX1_22_H03_A002 /clone_end=3' /gb=CN139485 /gi=45974765
Sbi.16926
GABR1_30_G04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_30_G04_A002 5', mRNA sequence /clone=GABR1_30_G04_A002 /clone_end=5' /gb=CX616946 /gi=57815733
Vvi.10343
S1G02258 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G02258, mRNA sequence /clone=S1G02258 /gb=EE075816
Vvi.8548
EST 13354 Green Grape (harvested at 5 p.m.) Pedicles Lambda Triplex2 Library Vitis vinifera cDNA clone P3CH5BGP001D05 3', mRNA sequence /clone=P3CH5BGP001D05 /clone_end=3' /gb=CD800109

Domain Architecture

Response_reg PF00072 4776698
DomainStartEndBit scoreE-value
Response_reg1712894.63.5e-25
Myb_DNA-binding20325349.11.7e-11
G2-like206253117.65.8e-35

Sequences