Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 47768

Identification

Species:
Selaginella moellendorffii
Gene model
47768
Description
gw1.100.218.1
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 1OFC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487691 Score: 1

Arabidopsis thaliana

AT5G08520.1 Score: 1

Carica papaya

evm.TU.supercontig_112.57 Score: 1

Chlamydomonas reinhardtii

338485 Score: 1

Coccomyxa sp. C-169

70912 Score: 1

Micromonas pusilla CCMP1545

21479 Score: 1

Micromonas sp. RCC299

105391 Score: 1

Ostreococcus lucimarinus

8087 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g37730.1 Score: 1

Ostreococcus tauri

23487 Score: 1

Physcomitrella patens

147199 Score: 1

Populus trichocarpa

218006 Score: 1

Sorghum bicolor

5060598 Score: 1

Vitis vinifera

GSVIVP00017631001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27639
Arabidopsis thaliana myb family transcription factor (AT5G01200) mRNA, complete cds /cds=p(1,804) /gb=NM_120198
At.32952
Arabidopsis thaliana myb family transcription factor (AT5G05790) mRNA, complete cds /cds=p(358,1191) /gb=NM_120661
At.7757
Arabidopsis thaliana myb family transcription factor (AT5G58900) mRNA, complete cds /cds=p(668,1534) /gb=NM_125280
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Os.15338
Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds /cds=p(20,940) /gb=AY151042
Os.15556
Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence /gb=AK106166
Os.18392
Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence /cds=p(396,1343) /gb=AK068138
Os.42406
Oryza sativa Japonica Group cDNA clone:001-030-C10, full insert sequence /gb=AK111988
Pba.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Pth.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Ptp.3737
R044H10 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU886395
Vvi.10013
WIN0520.C21_A24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0520_A24 3', mRNA sequence /clone=WIN0520_A24 /clone_end=3' /gb=EC940561
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110
Vvi.23727
sT7aVVM004H08026 VVM Vitis vinifera cDNA clone VVM004H08026 5' similar to emb_CAO48712.1 unnamed protein product [Vitis vinifera]. Expect = 2e-120, mRNA sequence /clone=VVM004H08026 /clone_end=5' /gb=FC062566
Vvi.5667
CAP0001_IVF_H04 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0001_IVF_H04 5', mRNA sequence /clone=CAP0001_IVF_H04 /clone_end=5' /gb=CF515425

Domain Architecture

Myb_DNA-binding PF00249 47768
DomainStartEndBit scoreE-value
Myb_DNA-binding46023.60.00079
Myb_DNA-binding112159452.8e-10

Sequences