Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 477698

Identification

Species:
Arabidopsis lyrata
Gene model
477698
Description
fgenesh2_kg.3__399__AT3G04380.1
Family
SET
3D structure (top 5)
2R3A 3F9X 2RFI 1ML9 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G04380.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g40770.1 Score: 1
LOC_Os02g40770.2 Score: 1

Physcomitrella patens

3159 Score: 1

Populus trichocarpa

241475 Score: 1

Sorghum bicolor

5058868 Score: 1

Selaginella moellendorffii

85776 Score: 1

Zea mays

GRMZM2G138115_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
At.27206
Arabidopsis thaliana Su(VAR)3-9-related protein 4 (SUVR4) mRNA, complete cds /cds=p(216,1682) /gb=AF408062
Os.53850
Oryza sativa Japonica Group cDNA clone:J023086A12, full insert sequence /cds=p(195,2420) /gb=AK100391
Ppa.19113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_3159) mRNA, partial cds /cds=p(1,966) /gb=XM_001785757
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

WIYLD PF10440 477698
DomainStartEndBit scoreE-value
WIYLD56799.11.5e-26
Pre-SET13027814.82.4e-05
SET280425151.91.9e-42

Sequences