Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4779347

Identification

Species:
Sorghum bicolor
Gene model
4779347
Description
e_gw1.1.17004.1
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 1L9Z 2A6H 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Cyanidioschyzon merolae

CMQ213C Score: 1

Coccomyxa sp. C-169

72683 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Selaginella moellendorffii

117159 Score: 1

Vitis vinifera

GSVIVP00028718001 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.27006
J001F01 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone J001F01, mRNA sequence /clone=J001F01 /gb=BI810206
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Os.88896
Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821

Domain Architecture

Sigma70_r2 PF04542 4779347
DomainStartEndBit scoreE-value
Sigma70_r229936972.61.5e-18
Sigma70_r3373454852.7e-22
Sigma70_r446651989.71e-23

Sequences