Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 477944

Identification

Species:
Arabidopsis lyrata
Gene model
477944
Description
fgenesh2_kg.3__645__AT3G06410.1
Family
C3H
3D structure (top 5)
1M9O 2CQE 2D9N 2E5S 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G06410.1 Score: 1

Populus trichocarpa

229700 Score: 1

Vitis vinifera

GSVIVP00019796001 Score: 1

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
At.22535
Arabidopsis thaliana nucleic acid binding (AT5G18550) mRNA, complete cds /cds=p(338,1735) /gb=NM_121860
At.27771
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-11-O09 /cds=p(267,1655) /gb=AK230312
Mtr.10686
EST647280 HOGA Medicago truncatula cDNA clone HOGA-31I22, mRNA sequence /clone=HOGA-31I22 /gb=CB894488

Domain Architecture

zf-CCCH PF00642 477944
DomainStartEndBit scoreE-value
zf-CCCH507646.21.3e-10
zf-CCCH9612244.63.8e-10
zf-CCCH14417045.42.3e-10
zf-CCCH29832447.94e-11
zf-CCCH34437039.31.5e-08

Sequences