Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4784895

Identification

Species:
Sorghum bicolor
Gene model
4784895
Description
e_gw1.1.5223.1
Family
Trihelix
3D structure (top 5)
2EBI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

895569 Score: 1

Arabidopsis thaliana

AT1G76880.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g37240.2 Score: 1
LOC_Os10g37240.3 Score: 1

Populus trichocarpa

551322 Score: 1

Zea mays

GRMZM2G113585_P01 Score: 1
GRMZM2G145863_P01 Score: 1

Expression data

Expressed Sequence Tags

At.25099
Arabidopsis thaliana GT2; transcription factor (GT2) mRNA, complete cds /cds=p(90,1817) /gb=NM_106340
At.70105
Arabidopsis thaliana trihelix DNA-binding protein, putative (AT1G76880) mRNA, complete cds /cds=p(95,1906) /gb=NM_106339
At.73050
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-A17 /cds=p(677,922) /gb=AK227778
Hv.29321
AL509143 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY10N10V 5', mRNA sequence /clone=HY10N10 /clone_end=5' /gb=AL509143
Os.39576
Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence /cds=p(439,2616) /gb=AK241800
Os.88349
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence /gb=CT830545
Ptp.3220
X011B09 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU894555
Vvi.12112
SBB04850 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB04850, mRNA sequence /clone=SBB04850 /gb=EE104062

Domain Architecture

trihelix trihelix 4784895
DomainStartEndBit scoreE-value
trihelix155218135.42.5e-40

Sequences