Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 478627

Identification

Species:
Arabidopsis lyrata
Gene model
478627
Description
fgenesh2_kg.3__1328__AT3G12680.1
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RHK 2D9N 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G12680.1 Score: 1

Carica papaya

evm.TU.supercontig_118.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g42970.1 Score: 1
LOC_Os01g42970.2 Score: 0.987

Physcomitrella patens

131143 Score: 1

Populus trichocarpa

659387 Score: 1

Sorghum bicolor

4879172 Score: 1

Vitis vinifera

GSVIVP00002135001 Score: 1

Zea mays

GRMZM2G093281_P02 Score: 1
GRMZM2G122777_P02 Score: 1

Expression data

Expressed Sequence Tags

At.5670
Arabidopsis thaliana HUA1 (ENHANCER OF AG-4 1) (HUA1) mRNA, complete cds /cds=p(142,1716) /gb=NM_112103
Mtr.8737
NF069F01FL1F1015 Developing flower Medicago truncatula cDNA clone NF069F01FL 5', mRNA sequence /clone=NF069F01FL /clone_end=5' /gb=BQ146391
Os.1486
Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence /cds=p(96,1481) /gb=AK112116
Ptp.4402
T010H11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830627
Sbi.5891
OX1_60_F11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_60_F11_A002 5', mRNA sequence /clone=OX1_60_F11_A002 /clone_end=5' /gb=CN137947 /gi=45971995
Vvi.23278
VV_PEa19h08.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV231277
Vvi.5244
VV_PEa19h08.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV231278

Domain Architecture

zf-CCCH PF00642 478627
DomainStartEndBit scoreE-value
zf-CCCH17219839.31.6e-08
zf-CCCH223249422.4e-09
zf-CCCH266292422.3e-09
zf-CCCH33836447.64.7e-11
zf-CCCH418444461.5e-10
zf-CCCH47149744.44.4e-10

Sequences