Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4790239

Identification

Species:
Sorghum bicolor
Gene model
4790239
Description
e_gw1.2.18558.1
Family
C2H2
3D structure (top 5)
2I13 2JP9 2RPC 2CSH 1X6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473652 Score: 1

Arabidopsis thaliana

AT1G34790.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g31140.1 Score: 1

Physcomitrella patens

143486 Score: 1

Populus trichocarpa

413115 Score: 1

Selaginella moellendorffii

110681 Score: 1

Sorghum bicolor

4131129 Score: 1
4790239 Score: 1

Expression data

Expressed Sequence Tags

At.28309
Arabidopsis thaliana zinc finger (C2H2 type) protein (WIP3) (AT1G08290) mRNA, complete cds /cds=p(63,1076) /gb=NM_100702
At.28310
Arabidopsis thaliana NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (NTT) mRNA, complete cds /cds=p(34,1185) /gb=NM_115627
At.37870
Arabidopsis thaliana zinc finger (C2H2 type) protein (WIP5) (AT1G51220) mRNA, complete cds /cds=p(116,1129) /gb=NM_104000
At.38162
Arabidopsis thaliana zinc finger (C2H2 type) protein (WIP4) (AT3G20880) mRNA, complete cds /cds=p(92,1330) /gb=NM_112980
At.39652
Arabidopsis thaliana mRNA for Transparent Testa 1, TT1 (At1g34790 gene) /cds=p(52,963) /gb=AJ318491
At.42038
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT1G13290) mRNA, complete cds /cds=p(94,1002) /gb=NM_101200
Mtr.15570
EST638815 MTUS Medicago truncatula cDNA clone MTUS-35H12, mRNA sequence /clone=MTUS-35H12 /gb=CA921097
Os.36152
Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence /cds=p(135,1265) /gb=AK064334
Os.49270
Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence /cds=p(125,1462) /gb=AK071104
Os.51785
Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds /cds=p(105,971) /gb=EF626940
Os.54232
Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence /gb=AK102658
Os.55753
Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence /cds=p(153,842) /gb=AK108729
Os.82984
Oryza sativa (japonica cultivar-group) Os09g0282300 (Os09g0282300) mRNA, complete cds /cds=p(1,921) /gb=NM_001069307
Os.95816
Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence /gb=AK287566
Pba.6830
WS02536.B21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_O13 3', mRNA sequence /clone=WS02536_O13 /clone_end=3' /gb=DT488608
Ppa.21584
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_143486) mRNA, complete cds /cds=p(1,702) /gb=XM_001776244
Ptp.6825
UK111TA07.5pR Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA clone UK111TA07 5', mRNA sequence /clone=UK111TA07 /clone_end=5' /gb=DN500250
Vvi.11905
WIN0813.C21_H19 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_H19 3', mRNA sequence /clone=WIN0813_H19 /clone_end=3' /gb=EC962090

Domain Architecture

zf-C2H2 PF00096 4790239
DomainStartEndBit scoreE-value
zf-C2H2194121.30.004
zf-C2H210312518.90.021

Sequences